DIPY WORKSHOP

Online Edition

24th - 28th April 2023

Everywhere in the world!

Workshop has been started
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About the workshop

Attention grads, researchers, physicists, radiologists, doctors and technicians interested in medical imaging! Join us for an exciting online workshop hosted by DIPY. Our comprehensive program is designed to equip you with the skills and knowledge needed to master the latest techniques and tools in structural and diffusion imaging.

Our team of expert instructors will guide you through the fundamentals of diffusion theory, data pre-processing, fiber tracking, and much more. You'll have the opportunity to learn from industry-leading professionals, ask questions, and network with like-minded peers.

Whether you're new to diffusion imaging or an experienced practitioner, this workshop is perfect for you. Our curriculum is tailored to meet the needs of individuals at all levels of expertise. Don't miss this chance to enhance your skills and advance your career.

Register today to secure your spot in this highly anticipated event. We can't wait to see you in the event!

– DIPY Team!

Speakers

Eleftherios Garyfallidis

Eleftherios Garyfallidis

Chair, DIPY Founder & Lead Developer

Associate Professor, Indiana University

Matthew Brett

Matthew Brett

Founder of NIBABEL

Associate Professor of Data Science, Birmingham University

Ariel Rokem

Ariel Rokem

Associate DIPY Lead, eScience Institute

Research Associate Professor, University of Washington, Seattle

Jason Yeatman

Jason Yeatman

Assistant Professor

Graduate School of Education, Stanford

Gabriel Girard

Gabriel Girard

Research Scientist

University of Sherbrooke

Sarah Heilbronner

Sarah Heilbronner

Associate Professor

Baylor College of Medicine

Bennett Landman

Bennett Landman

Professor

Vanderbilt University

Jaroslaw Harezlak

Jaroslaw Harezlak

DIPY Advisor on Statistics

Professor, Indiana University

Rafael Neto Henriques

Rafael Neto Henriques

Postdoctoral Researcher

Champalimaud Centre for the Unknown, PT

Wei Tang

Wei Tang

Research Scientist

Indiana University

Jon Haitz Legarreta Gorroño

Jon Haitz Legarreta Gorroño

Postdoctoral Research Fellow

Harvard University

Serge Koudoro

Serge Koudoro

DIPY Release Manager

Indiana University

Shreyas Fadnavis

Shreyas Fadnavis

Postdoctoral Research Fellow

Harvard University

Bramsh Qamar Chandio

Bramsh Qamar Chandio

Postdoctoral Scholar

University of Southern California

Javier Guaje

Javier Guaje

PhD Student

Indiana University

Sreekar Chigurupati

Sreekar Chigurupati

PhD Student

Indiana University

Jong Sung Park

Jong Sung Park

PhD Student

Indiana University

Conference Management

Kelsey Daniel

Kelsey Daniel

Senior Conference Manager

Indiana University

Maharshi Gor

Maharshi Gor

Website & Technical Support

Indiana University

Participants From

Special Thanks

Multiple speakers including Garyfallidis, Landman and Harezlak are funded by the National Institutes of Health. In addition, Koudoro, Rokem and Girard are funded from an EOSS grant through the Chan Zuckerberg Initiative.

Why DIPY Workshop?

Here are a few reasons why attending the DIPY MR Imaging workshop is essential:

  1. 1.

    Hands-on experience:

    The workshop offers a hands-on learning experience, which is essential for learning how to use MR imaging techniques and software effectively. The practical sessions provide attendees with the opportunity to work on real-world problems and gain valuable experience in the field.

  2. 2.

    Expert instructors:

    The workshop is led by expert instructors who have extensive experience in MR imaging and DIPY software. They provide valuable insights and expertise, which is essential for staying up-to-date with the latest advancements in this rapidly evolving field.

  3. 3.

    Networking opportunities:

    The workshop provides an excellent opportunity for attendees to network with other professionals in the field. This can lead to collaborations and the sharing of knowledge and expertise, which is critical for advancing research in the field.

  4. 4.

    Access to the latest technology:

    The DIPY workshop provides access to the latest software for analyzing and processing MR imaging data. This ensures that attendees are working with the most advanced technology available, which can lead to more accurate and efficient analysis of data.

  5. 5.

    Deep understanding of the theory behind the methods:

    The topics covered need a solid understanding of the models, theory and math. For this reason, all tutorials will be provided at four levels :
    a) Theory
    b) Algorithms/Methods
    c) Code/Interfaces
    d) Clinical Application Examples.

Highlights

Highlights

highlight 1
Advanced tractometry
highlight 2
Warping of bundles
highlight 3
Cinematic visualization
highlight 4
State-of-the-art preprocessing
highlight 5
Accurate brain extraction
highlight 6
Generative approaches for missing data

Schedule

All the times mentioned in the section are according to PDT Time Zone.

Day 1 - Monday, April 24

Preprocessing
Workshop Overview

09:15 - 09:45

Eleftherios Garyfallidis
Hands-on Imaging in Python

10:00 - 10:45

Matthew Brett
Imaging Data and NiBabel

11:00 - 11:45

Matthew Brett
Visualization of 3D/4D Data

13:30 - 13:45

Javier Guaje
Brain extraction and Tissue Classification

14:00 - 14:45

Jong Sung Park
Image-based Registration

15:00 - 15:45

Serge Koudoro
Data Harmonization

16:00 - 16:45

Bennett Landman
Denoising and Gibbs Correction

17:00 - 17:45

Shreyas Fadnavis
Study Group Sessions

18:00 - 18:30

All

Day 2 - Tuesday, April 25

Reconstruction
Susceptibility Correction

09:00 - 09:45

Sreekar Chigurupati
Guided Practice

10:00 - 11:45

Serge Koudoro
Diffusion Tensor and Kurtosis Imaging

13:30 - 14:15

Ariel Rokem
Spherical Harmonic Reconstruction

14:30 - 15:15

Eleftherios Garyfallidis
Microstructure Modeling

15:30 - 16:15

Ariel Rokem
Q-Space Trajectory and Correlation Tensor Imaging

16:30 - 17:15

Rafael Henriques
E-Posters (Present your work)

17:30 - 18:30

All

Day 3 - Wednesday, April 26

Tractography
Computational Neuroanatomy

9:00 - 9:45

Wei Tang
Tractography Algorithms

10:00 - 10:45

Gabriel Girard
Connectomics Research

11:00 - 11:45

Gabriel Girard
Tractography Segmentation

13:30 - 14:15

Eleftherios Garyfallidis
Tractography-based Registration

14:30 - 15:15

Bramsh Qamar Chandio
Guided Practice

15:30 - 16:50

Eleftherios Garyfallidis
ChatGPT and Midjourney for MI?

17:00 - 17:30

Sreekar Chigurupati
E-Posters (Present your work)

17:40 - 18:30

All

Day 4 - Thursday, April 27

Tractometry
Tractometry Analysis

09:00 - 09:45

Bramsh Qamar Chandio
Statistical Analysis

10:00 - 10:45

Jaroslaw Harezlak
A wiring diagram of the brain? How?

11:00 - 11:45

Sarah Heilbronner
Searching for Brain Pathways

13:30 - 14:15

Jason Yeatman
Deep Learning for Tractography

14:30 - 15:15

Jon Haitz Legarreta Gorroño
Guided Practice

15:30 - 17:20

Bramsh Qamar Chandio
Study Group Sessions

17:30 - 18:30

All

Day 5 - Friday, April 28

Mixed Topics
IVIM

09:00 - 09:45

Shreyas Fadnavis
Pediatric Imaging

10:00 - 10:45

Jason Yeatman
FURY and the Horizon

11:00 - 11:45

Javier Guaje
Guided Practice

13:30 - 16:30

Eleftherios Garyfallidis
Project Reports

16:30 - 17:30

All
Final Assembly

17:30 - 18:00

All

Registration

Student

Master's Degree Students, PhD Candidates, Postdocs should take this option.

Silver

$200

What will be included?

  • Listen to the talks live.
  • Learn from the experts.
  • First 3 days workshop.
  • Basic kit for diffusion imaging.
  • Ability to upgrade during the workshop.

Gold

$500

What will be included?

  • Everything in Silver.
  • Complete 5 days of workshop.
  • Attend study groups
  • Present your work.
  • LinkedIn verifiable certificate.
  • Ability to upgrade during the workshop.

Platinum

$995

What will be included?

  • Everything in Gold.
  • Up to 6 one-hour 1:1 with DIPY developers.
  • Access to talks after the workshop.
  • Access to materials after the workshop.
  • Year-long support option.

Academic

Faculty, Research Scientists, Any Academic Personnel should take this option.

Silver

$300

What will be included?

  • Listen to the talks live.
  • Learn from the experts.
  • First 3 days of workshop.
  • Basic kit for diffusion imaging.
  • Ability to upgrade during the workshop.

Gold

$600

What will be included?

  • Everything in Silver.
  • Complete 5 days of workshop.
  • Attend study groups
  • Present your work.
  • LinkedIn verifiable certificate.
  • Ability to upgrade during the workshop.

Platinum

$1200

What will be included?

  • Everything in Gold.
  • Up to 6 one-hour 1:1 with DIPY developers.
  • Access to talks after the workshop.
  • Access to materials after the workshop.
  • Year-long support option.

Non - Academic

Industry Personnel, Medical Staff, Radiologists, Neurologists, etc. should take this option.

Silver

$400

What will be included?

  • Listen to the talks live.
  • Learn from the experts.
  • First 3 days workshop.
  • Basic kit for diffusion imaging.
  • Ability to upgrade during the workshop.

Gold

$750

What will be included?

  • Everything in Silver.
  • Complete 5 days of workshop.
  • Attend study groups
  • Present your work.
  • LinkedIn verifiable certificate.
  • Ability to upgrade during the workshop.

Platinum

$1500

What will be included?

  • Everything in Gold.
  • Up to 6 one-hour 1:1 with DIPY developers.
  • Access to talks after the workshop.
  • Access to materials after the workshop.
  • Year-long support option.

Contact

Contact us for more information by sending an email at dipy@python.org

or joining our interactive chatroom at https://gitter.im/dipy/dipy