ApplyTransformFlow

Parameters

static_image_files : string

Path of the static image file.

moving_image_files : string

Path of the moving image(s). It can be a single image or a folder containing multiple images.

transform_map_file : string

For the affine case, it should be a text(*.txt) file containing the affine matrix. For the diffeomorphic case, it should be a nifti file containing the mapping displacement field in each voxel with this shape (x, y, z, 3, 2)

transform_type : string, optional

Select the transformation type to apply between ‘affine’ or ‘diffeomorphic’. (default affine)

out_dir : string, optional

Directory to save the transformed files (default ‘’).

out_file : string, optional

Name of the transformed file (default ‘transformed.nii.gz’).

It is recommended to use the flag –mix-names to

prevent the output files from being overwritten.