ReconstDtiFlow

Parameters

input_files : string

Path to the input volumes. This path may contain wildcards to process multiple inputs at once.

bvalues_files : string

Path to the bvalues files. This path may contain wildcards to use multiple bvalues files at once.

bvectors_files : string

Path to the bvectors files. This path may contain wildcards to use multiple bvectors files at once.

mask_files : string

Path to the input masks. This path may contain wildcards to use multiple masks at once. (default: No mask used)

b0_threshold : float, optional

Threshold used to find b=0 directions (default 0.0)

bvecs_tol : float, optional

Threshold used to check that norm(bvec) = 1 +/- bvecs_tol b-vectors are unit vectors (default 0.01)

save_metrics : variable string, optional

List of metrics to save. Possible values: fa, ga, rgb, md, ad, rd, mode, tensor, evec, eval (default [] (all))

out_dir : string, optional

Output directory (default input file directory)

out_tensor : string, optional

Name of the tensors volume to be saved (default ‘tensors.nii.gz’)

out_fa : string, optional

Name of the fractional anisotropy volume to be saved (default ‘fa.nii.gz’)

out_ga : string, optional

Name of the geodesic anisotropy volume to be saved (default ‘ga.nii.gz’)

out_rgb : string, optional

Name of the color fa volume to be saved (default ‘rgb.nii.gz’)

out_md : string, optional

Name of the mean diffusivity volume to be saved (default ‘md.nii.gz’)

out_ad : string, optional

Name of the axial diffusivity volume to be saved (default ‘ad.nii.gz’)

out_rd : string, optional

Name of the radial diffusivity volume to be saved (default ‘rd.nii.gz’)

out_mode : string, optional

Name of the mode volume to be saved (default ‘mode.nii.gz’)

out_evec : string, optional

Name of the eigenvectors volume to be saved (default ‘evecs.nii.gz’)

out_eval : string, optional

Name of the eigenvalues to be saved (default ‘evals.nii.gz’)

References