dipy_correct_motion

Usage

dipy_correct_motion [-h] [–b0_threshold float] [–bvecs_tol float] [–out_dir str] [–out_moved str] [–out_affine str] input_files bvalues_files bvectors_files

Positional Arguments

input_files Path to the input volumes. This path may contain wildcards to process multiple inputs at once. bvalues_files Path to the bvalues files. This path may contain wildcards to use multiple bvalues files at once. bvectors_files Path to the bvectors files. This path may contain wildcards to use multiple bvectors files at once.

Optional Arguments

-h, --help

show this help message and exit

--b0_threshold float

Threshold used to find b0 volumes.

--bvecs_tol float

Threshold used to check that norm(bvec) = 1 +/- bvecs_tol b-vectors are unit vectors

Output Arguments(Optional)

--out_dir str

Directory to save the transformed image and the affine matrix (default current directory).

--out_moved str

Name for the saved transformed image.

--out_affine str

Name for the saved affine matrix.

References

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.