API Reference
dipy
__config__align
align._publicalign.cpd
align.imaffine
align.imwarpalign.metricsalign.reslicealign.scalespacealign.streamlinearalign.streamwarp
Bunch
DeformableRegistration
DeformableRegistration
DeformableRegistration.__init__()DeformableRegistration.expectation()DeformableRegistration.get_registration_parameters()DeformableRegistration.iterate()DeformableRegistration.maximization()DeformableRegistration.register()DeformableRegistration.transform_point_cloud()DeformableRegistration.update_transform()DeformableRegistration.update_variance()AffineInversionError
AffineInvalidValuesError
AffineMap
MutualInformationMetric
AffineRegistration
DiffeomorphicMap
DiffeomorphicMap
DiffeomorphicMap.__init__()DiffeomorphicMap.allocate()DiffeomorphicMap.compute_inversion_error()DiffeomorphicMap.expand_fields()DiffeomorphicMap.get_backward_field()DiffeomorphicMap.get_forward_field()DiffeomorphicMap.get_simplified_transform()DiffeomorphicMap.interpret_matrix()DiffeomorphicMap.inverse()DiffeomorphicMap.shallow_copy()DiffeomorphicMap.transform()DiffeomorphicMap.transform_inverse()DiffeomorphicMap.transform_points()DiffeomorphicMap.transform_points_inverse()DiffeomorphicMap.warp_endomorphism()DiffeomorphicRegistration
SymmetricDiffeomorphicRegistration
SimilarityMetric
SimilarityMetric
SimilarityMetric.__init__()SimilarityMetric.compute_backward()SimilarityMetric.compute_forward()SimilarityMetric.free_iteration()SimilarityMetric.get_energy()SimilarityMetric.initialize_iteration()SimilarityMetric.set_levels_above()SimilarityMetric.set_levels_below()SimilarityMetric.set_moving_image()SimilarityMetric.set_static_image()SimilarityMetric.use_moving_image_dynamics()SimilarityMetric.use_static_image_dynamics()CCMetric
EMMetric
SSDMetric
ScaleSpace
IsotropicScaleSpace
StreamlineDistanceMetric
BundleMinDistanceMetric
BundleMinDistanceMatrixMetric
BundleMinDistanceAsymmetricMetric
BundleSumDistanceMatrixMetric
JointBundleMinDistanceMetric
StreamlineLinearRegistration
StreamlineRegistrationMap
JointStreamlineRegistrationMap
bootscore
core.geometrycore.gradientscore.graphcore.histeqcore.ndindexcore.onetime
core.optimizecore.profilecore.rngcore.spherecore.sphere_statscore.subdivide_octahedroncore.wavelet
GradientTable
Graph
ResetMixin
OneTimeProperty
Optimizer
SKLearnLinearSolver
NonNegativeLeastSquares
PositiveDefiniteLeastSquares
Profiler
Sphere
HemiSphere
data
data.fetcher
DataError
denoise
direction
io
io.bvectxtio.dpy
io.gradientsio.imageio.peaksio.picklesio.stateful_tractogramio.streamlineio.utilsio.vtk
Dpy
Space
Origin
StatefulTractogram
StatefulTractogram
StatefulTractogram.__init__()StatefulTractogram.affineStatefulTractogram.are_compatible()StatefulTractogram.compute_bounding_box()StatefulTractogram.data_per_pointStatefulTractogram.data_per_streamlineStatefulTractogram.dimensionsStatefulTractogram.dtype_dictStatefulTractogram.from_sft()StatefulTractogram.get_data_per_point_keys()StatefulTractogram.get_data_per_streamline_keys()StatefulTractogram.get_streamlines_copy()StatefulTractogram.is_bbox_in_vox_valid()StatefulTractogram.originStatefulTractogram.remove_invalid_streamlines()StatefulTractogram.spaceStatefulTractogram.space_attributesStatefulTractogram.streamlinesStatefulTractogram.to_center()StatefulTractogram.to_corner()StatefulTractogram.to_origin()StatefulTractogram.to_rasmm()StatefulTractogram.to_space()StatefulTractogram.to_vox()StatefulTractogram.to_voxmm()StatefulTractogram.voxel_orderStatefulTractogram.voxel_sizesnn
nn.cnn_1d_denoising
nn.evacnn.histo_resdnnnn.modelnn.synb0nn.utils
reconst
reconst.basereconst.benchmarksreconst.benchmarks.bench_bounding_boxreconst.benchmarks.bench_csdreconst.benchmarks.bench_peaksreconst.benchmarks.bench_squashreconst.benchmarks.bench_vec_val_sumreconst.cachereconst.cross_validationreconst.csdeconvreconst.dkireconst.dki_microreconst.dsireconst.dtireconst.forecastreconst.fwdtireconst.gqireconst.ivimreconst.mapmrireconst.mcsdreconst.msdkireconst.multi_voxelreconst.odfreconst.qtdmrireconst.qtireconst.rumbareconst.sfmreconst.shm
reconst.shorereconst.utils
ReconstModel
ReconstFit
Cache
AxSymShResponse
ConstrainedSphericalDeconvModel
ConstrainedSDTModel
DiffusionKurtosisModel
DiffusionKurtosisFit
KurtosisMicrostructureModel
KurtosisMicrostructuralFit
KurtosisMicrostructuralFit
KurtosisMicrostructuralFit.__init__()KurtosisMicrostructuralFit.awfKurtosisMicrostructuralFit.axonal_diffusivityKurtosisMicrostructuralFit.hindered_adKurtosisMicrostructuralFit.hindered_evalsKurtosisMicrostructuralFit.hindered_rdKurtosisMicrostructuralFit.predict()KurtosisMicrostructuralFit.restricted_evalsKurtosisMicrostructuralFit.tortuosityDiffusionSpectrumModel
DiffusionSpectrumFit
DiffusionSpectrumDeconvModel
DiffusionSpectrumDeconvFit
TensorModel
TensorFit
TensorFit
TensorFit.__init__()TensorFit.S0_hatTensorFit.ad()TensorFit.adc()TensorFit.color_fa()TensorFit.directionsTensorFit.evalsTensorFit.evecsTensorFit.fa()TensorFit.ga()TensorFit.linearity()TensorFit.lower_triangular()TensorFit.md()TensorFit.mode()TensorFit.odf()TensorFit.planarity()TensorFit.predict()TensorFit.quadratic_formTensorFit.rd()TensorFit.shapeTensorFit.sphericity()TensorFit.trace()ForecastModel
ForecastFit
FreeWaterTensorModel
FreeWaterTensorFit
GeneralizedQSamplingModel
GeneralizedQSamplingFit
IvimModelTRR
IvimModelVP
IvimFit
MapmriModel
MapmriFit
MapmriFit
MapmriFit.__init__()MapmriFit.fitted_signal()MapmriFit.mapmri_RMapmriFit.mapmri_coeffMapmriFit.mapmri_muMapmriFit.msd()MapmriFit.ng()MapmriFit.ng_parallel()MapmriFit.ng_perpendicular()MapmriFit.norm_of_laplacian_signal()MapmriFit.odf()MapmriFit.odf_sh()MapmriFit.pdf()MapmriFit.predict()MapmriFit.qiv()MapmriFit.rtap()MapmriFit.rtop()MapmriFit.rtpp()MultiShellResponse
MultiShellDeconvModel
MSDeconvFit
QpFitter
MeanDiffusionKurtosisModel
MeanDiffusionKurtosisFit
MultiVoxelFit
CallableArray
OdfModel
OdfFit
QtdmriModel
QtdmriFit
QtdmriFit
QtdmriFit.__init__()QtdmriFit.fitted_signal()QtdmriFit.msd()QtdmriFit.norm_of_laplacian_signal()QtdmriFit.odf()QtdmriFit.odf_sh()QtdmriFit.pdf()QtdmriFit.predict()QtdmriFit.qiv()QtdmriFit.qtdmri_to_mapmri_coef()QtdmriFit.rtap()QtdmriFit.rtop()QtdmriFit.rtpp()QtdmriFit.sparsity_abs()QtdmriFit.sparsity_density()QtiModel
QtiFit
RumbaSDModel
RumbaFit
IsotropicModel
IsotropicFit
ExponentialIsotropicModel
ExponentialIsotropicFit
SparseFascicleModel
SparseFascicleFit
SphHarmModel
QballBaseModel
SphHarmFit
CsaOdfModel
OpdtModel
QballModel
ResidualBootstrapWrapper
ShoreModel
ShoreFit
segment
segment.benchmarkssegment.benchmarks.bench_quickbundlessegment.bundlessegment.clusteringsegment.fsssegment.masksegment.metricsegment.thresholdsegment.tissue
MDFpy
RecoBundles
Identity
Cluster
ClusterCentroid
ClusterMap
ClusterMapCentroid
Clustering
QuickBundles
QuickBundlesX
TreeCluster
TreeClusterMap
FastStreamlineSearch
TissueClassifierHMRF
sims
sims.phantomsims.voxel
stats
tracking
tracking._utilstracking.benchmarkstracking.benchmarks.bench_streamlinetracking.learningtracking.lifetracking.local_trackingtracking.meshtracking.metricstracking.streamlinetracking.utils
LifeSignalMaker
FiberModel
FiberFit
LocalTracking
ParticleFilteringTracking
viz
viz.appviz.gmemviz.horizonviz.horizon.appviz.horizon.tabviz.horizon.tab.baseviz.horizon.tab.clusterviz.horizon.tab.peakviz.horizon.tab.roiviz.horizon.tab.sliceviz.horizon.visualizerviz.horizon.visualizer.clusterviz.horizon.visualizer.sliceviz.panelviz.plottingviz.projectionsviz.regtoolsviz.streamline
Horizon
GlobalHorizon
Horizon
HorizonTab
TabManager
ClustersTab
PeaksTab
ROIsTab
SlicesTab
ClustersVisualizer
SlicesVisualizer
workflows
workflows.alignworkflows.baseworkflows.combined_workflowworkflows.denoiseworkflows.docstring_parserworkflows.flow_runnerworkflows.ioworkflows.maskworkflows.multi_ioworkflows.reconstworkflows.segmentworkflows.statsworkflows.trackingworkflows.vizworkflows.workflow
ResliceFlow
SlrWithQbxFlow
ImageRegistrationFlow
ApplyTransformFlow
SynRegistrationFlow
MotionCorrectionFlow
BundleWarpFlow
IntrospectiveArgumentParser
IntrospectiveArgumentParser
IntrospectiveArgumentParser.__init__()IntrospectiveArgumentParser.add_description()IntrospectiveArgumentParser.add_epilogue()IntrospectiveArgumentParser.add_sub_flow_args()IntrospectiveArgumentParser.add_workflow()IntrospectiveArgumentParser.get_flow_args()IntrospectiveArgumentParser.optional_parametersIntrospectiveArgumentParser.output_parametersIntrospectiveArgumentParser.positional_parametersIntrospectiveArgumentParser.show_argument()IntrospectiveArgumentParser.update_argument()CombinedWorkflow
Patch2SelfFlow
NLMeansFlow
LPCAFlow
MPPCAFlow
GibbsRingingFlow
Reader
NumpyDocString
IoInfoFlow
FetchFlow
SplitFlow
MaskFlow
IOIterator
ReconstMAPMRIFlow
ReconstDtiFlow
ReconstCSDFlow
ReconstCSAFlow
ReconstDkiFlow
ReconstIvimFlow
ReconstRUMBAFlow
MedianOtsuFlow
RecoBundlesFlow
LabelsBundlesFlow
EVACPlusFlow
SNRinCCFlow
BundleAnalysisTractometryFlow
LinearMixedModelsFlow
BundleShapeAnalysis
LocalFiberTrackingPAMFlow
PFTrackingPAMFlow
HorizonFlow
Workflow