Documentation Contents: What is DIPY? Mission statement Installation Installing a release Support Installing from source Data Datasets Examples A note about the examples Quick Start Preprocessing Denoising Reconstruction Contextual enhancement Fiber tracking Streamline analysis and connectivity Registration Segmentation Simulations Multiprocessing File Formats Visualization Workflows DIPY Workflows Interfaces Introduction to command line interfaces Downloading DIPY datasets Denoising Between-Volumes Motion Correction Gibbs Unringing Registration Reconstruction Tracking BUndle ANalytics (BUAN) framework White Matter Bundle Segmentation with RecoBundles Frequently Asked Questions Theoretical Practical Developers Publications A note on citing our work DIPY development Introduction Working with DIPY source code A guide to making a DIPY release Commit message codes DIPY Coding Style Guideline Keeping code compatible with Pythons 2 and 3 Theory and concepts Spherical coordinates Spherical Harmonic bases API Reference dipy __config__ align boots core data denoise direction io nn reconst segment sims stats tracking viz workflows Command Line Utilities Reference dipy_align_affine dipy_align_syn dipy_apply_transform dipy_buan_lmm dipy_buan_profiles dipy_correct_motion dipy_denoise_lpca dipy_denoise_mppca dipy_denoise_nlmeans dipy_denoise_patch2self dipy_fetch dipy_fit_csa dipy_fit_csd dipy_fit_dki dipy_fit_dti dipy_fit_ivim dipy_fit_mapmri dipy_gibbs_ringing dipy_horizon dipy_info dipy_labelsbundles dipy_mask dipy_median_otsu dipy_recobundles dipy_reslice dipy_slr dipy_snr_in_cc dipy_split dipy_track dipy_track_pft API changes DIPY 1.6.0 changes DIPY 1.5.0 changes DIPY 1.4.1 changes DIPY 1.4.0 changes DIPY 1.3.0 changes DIPY 1.2.0 changes DIPY 1.1.1 changes DIPY 1.0.0 changes DIPY 0.16 Changes DIPY 0.15 Changes DIPY 0.14 Changes DIPY 0.13 Changes DIPY 0.12 Changes DIPY 0.10 Changes DIPY 0.9 Changes DIPY 0.8 Changes Changes between 0.7.1 and 0.6
Contents:
dipy
__config__
align
boots
core
data
denoise
direction
io
nn
reconst
segment
sims
stats
tracking
viz
workflows
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