GitHub stats for 2011/02/12 - 2013/03/20 The following 13 authors contributed 972 commits. Ariel Rokem Bago Amirbekian Eleftherios Garyfallidis Emanuele Olivetti Ian Nimmo-Smith Maria Luisa Mandelli Matthew Brett Maxime Descoteaux Michael Paquette Samuel St-Jean Stefan van der Walt Yaroslav Halchenko endolith We closed a total of 225 issues, 100 pull requests and 125 regular issues;
this is the full list (generated with the script
Pull Requests (100): PR #146: BF - allow Bootstrap Wrapper to work with markov tracking PR #143: Garyfallidis tutorials 0.6 PR #145: Mdesco dti metrics PR #141: Peak extraction isbi PR #142: RF - always use theta and phi in that order, (not “phi, theta”) PR #140: Sf2sh second try at correcting suggestions PR #139: Spherical function to spherical harmonics and back PR #138: Coding style fix for dsi_deconv PR #137: BF - check shapes before allclose PR #136: BF: add top-level benchmarking command PR #135: Refactor local maxima PR #134: BF - fix shm tests to accept antipodal directions as the same PR #133: Corrected test for Deconvolution after the discrete direction finder was removed PR #124: Remove direction finder PR #77: Rework tracking PR #132: A new fvtk function for visualizing fields of odfs PR #131: Add missing files PR #130: Implementation of DSI deconvolution from E.J. Canales-Rodriguez PR #128: Colorfa PR #129: RF - minor cleanup of pdf_odf code PR #127: Adding multi-tensor simulation PR #126: Improve local maxima PR #122: Removed calculation of gfa and other functions from inside the odf(sphere) of DSI and GQI PR #103: Major update of the website, with a few examples and with some additional minor RFs PR #121: NF: Allow the smoothing parameter to come through to rbf interpolation. PR #120: Fast squash fix PR #116: RF: common dtype for squash without result_type PR #117: Fix directions on TensorFit and add getitem PR #119: RF: raise errors for Python version dependencies PR #118: Separate fa PR #111: RF - clean up _squash in multi_voxel and related code PR #112: RF: fix vec_val_vect logic, generalize for shape PR #114: BF: fix face and edge byte order for sphere load PR #109: Faster einsum PR #110: TST: This is only almost equal on XP, for some reason. PR #108: TST + STY: Use and assert_equal so that we get more information upon failure PR #107: RF: A.dot(B) => np.dot(A, B) for numpy < 1.5 PR #102: BF - Allow ndindex to work with older numpy than 1.6. PR #106: RF: allow optional scipy.spatial.Delaunay PR #105: Skip doctest decorator PR #104: RF: remove deprecated old parametric testing PR #101: WIP: Fix isnan windows PR #100: Small stuff PR #94: Multivoxel dsi and gqi are back! PR #96: ENH: Implement masking for the new TensorModel implementation. PR #95: NF fetch publicly available datasets PR #26: Noise PR #84: Non linear peak finding PR #82: DTI new api PR #91: Shm new api PR #88: NF - wrapper function for multi voxel models PR #86: DOC: Fixed some typos, etc in the FAQ PR #90: A simpler ndindex using generators. PR #87: RF - Provide shape as argument to ndindex. PR #85: Add fast ndindex. PR #81: RF - fixup peaks_from_model to take use remove_similar_vertices and PR #79: BF: Fixed projection plots. PR #80: RF - remove some old functions tools PR #71: ENH: Make the internals of the io module visible on tab completion in ip… PR #76: Yay, more gradient stuff PR #75: Rename L2norm to vector_norm PR #74: Gradient rf PR #73: RF/BF - removed duplicate vector_norm/L2norm PR #72: Mr bago model api PR #68: DSI seems working again - Have a look PR #65: RF: Make the docstring and call consistent with scipy.interpolate.Rbf. PR #61: RF - Refactor direction finding. PR #60: NF - Add key-value cache for use in models. PR #63: TST - Disable reconstruction methods that break the test suite. PR #62: BF - Fix missing import in peak finding tests. PR #37: cleanup references in the code to E1381S6_edcor* (these were removed from… PR #55: Ravel multi index PR #58: TST - skip doctest when matplotlib is not available PR #59: optional_traits is not needed anymore PR #56: TST: Following change to API in dipy.segment.quickbundles. PR #52: Matplotlib optional PR #50: NF - added subdivide method to sphere PR #51: Fix tracking utils PR #48: BF - Brought back _filter peaks and associated test. PR #47: RF - Removed reduce_antipodal from sphere. PR #41: NF - Add radial basis function interpolation on the sphere. PR #39: GradientTable PR #40: BF - Fix axis specification in sph_project. PR #28: Odf+shm api update PR #36: Nf hemisphere preview PR #34: RF - replace _filter_peaks with unique_vertices PR #35: BF - Fix imports from dipy.core.sphere. PR #21: Viz 2d PR #32: NF - Sphere class. PR #30: RF: Don’t import all this every time. PR #24: TST: Fixing tests in reconst module. PR #27: DOC - Add reference to white matter diffusion values. PR #25: NF - Add prolate white matter as defaults for multi-tensor signal sim. PR #22: Updating my fork with the nipy master PR #20: RF - create OptionalImportError for traits imports PR #19: DOC: add comments and example to commit codes PR #18: DOC: update gitwash from source PR #17: Optional traits PR #14: DOC - fix frontpage example PR #12: BF(?): cart2sphere and sphere2cart are now invertible. PR #11: BF explicit type declaration and initialization for longest_track_len[AB] – for cython 0.15 compatibility Issues (125): #99: RF - Separate direction finder from model fit. #143: Garyfallidis tutorials 0.6 #144: DTI metrics #145: Mdesco dti metrics #123: Web content and examples for 0.6 #141: Peak extraction isbi #142: RF - always use theta and phi in that order, (not “phi, theta”) #140: Sf2sh second try at correcting suggestions #139: Spherical function to spherical harmonics and back #23: qball not properly import-able #29: Don’t import everything when you import dipy #138: Coding style fix for dsi_deconv #137: BF - check shapes before allclose #136: BF: add top-level benchmarking command #135: Refactor local maxima #134: BF - fix shm tests to accept antipodal directions as the same #133: Corrected test for Deconvolution after the discrete direction finder was removed #124: Remove direction finder #77: Rework tracking #132: A new fvtk function for visualizing fields of odfs #125: BF: Remove ‘mayavi’ directory, to avoid triggering mayavi import warning… #131: Add missing files #130: Implementation of DSI deconvolution from E.J. Canales-Rodriguez #128: Colorfa #129: RF - minor cleanup of pdf_odf code #127: Adding multi-tensor simulation #126: Improve local maxima #97: BF - separate out storing of fit values in gqi #122: Removed calculation of gfa and other functions from inside the odf(sphere) of DSI and GQI #103: Major update of the website, with a few examples and with some additional minor RFs #121: NF: Allow the smoothing parameter to come through to rbf interpolation. #120: Fast squash fix #116: RF: common dtype for squash without result_type #117: Fix directions on TensorFit and add getitem #119: RF: raise errors for Python version dependencies #118: Separate fa #113: RF - use min_diffusivity relative to 1 / max(bval) #111: RF - clean up _squash in multi_voxel and related code #112: RF: fix vec_val_vect logic, generalize for shape #114: BF: fix face and edge byte order for sphere load #109: Faster einsum #110: TST: This is only almost equal on XP, for some reason. #98: This is an update of PR #94 mostly typos and coding style #108: TST + STY: Use and assert_equal so that we get more information upon failure #107: RF: A.dot(B) => np.dot(A, B) for numpy < 1.5 #102: BF - Allow ndindex to work with older numpy than 1.6. #106: RF: allow optional scipy.spatial.Delaunay #105: Skip doctest decorator #104: RF: remove deprecated old parametric testing #101: WIP: Fix isnan windows #100: Small stuff #94: Multivoxel dsi and gqi are back! #96: ENH: Implement masking for the new TensorModel implementation. #95: NF fetch publicly available datasets #26: Noise #84: Non linear peak finding #82: DTI new api #91: Shm new api #88: NF - wrapper function for multi voxel models #86: DOC: Fixed some typos, etc in the FAQ #89: Consistent ndindex behaviour #90: A simpler ndindex using generators. #87: RF - Provide shape as argument to ndindex. #85: Add fast ndindex. #81: RF - fixup peaks_from_model to take use remove_similar_vertices and #83: Non linear peak finding #78: This PR replaces PR 70 #79: BF: Fixed projection plots. #80: RF - remove some old functions tools #70: New api dti #71: ENH: Make the internals of the io module visible on tab completion in ip… #76: Yay, more gradient stuff #69: New api and tracking refacotor #75: Rename L2norm to vector_norm #74: Gradient rf #73: RF/BF - removed duplicate vector_norm/L2norm #72: Mr bago model api #66: DOCS - docs for model api #49: Reworking tracking code. #68: DSI seems working again - Have a look #65: RF: Make the docstring and call consistent with scipy.interpolate.Rbf. #61: RF - Refactor direction finding. #60: NF - Add key-value cache for use in models. #63: TST - Disable reconstruction methods that break the test suite. #62: BF - Fix missing import in peak finding tests. #37: cleanup references in the code to E1381S6_edcor* (these were removed from… #55: Ravel multi index #46: BF: Trying to fix test failures. #57: TST: Reverted back to optional definition of the function to make TB hap… #58: TST - skip doctest when matplotlib is not available #59: optional_traits is not needed anymore #56: TST: Following change to API in dipy.segment.quickbundles. #52: Matplotlib optional #50: NF - added subdivide method to sphere #51: Fix tracking utils #48: BF - Brought back _filter peaks and associated test. #47: RF - Removed reduce_antipodal from sphere. #41: NF - Add radial basis function interpolation on the sphere. #33: Gradients Table class #39: GradientTable #45: BF - Fix sphere creation in triangle_subdivide. #38: Subdivide octahedron #40: BF - Fix axis specification in sph_project. #28: Odf+shm api update #36: Nf hemisphere preview #34: RF - replace _filter_peaks with unique_vertices #35: BF - Fix imports from dipy.core.sphere. #21: Viz 2d #32: NF - Sphere class. #30: RF: Don’t import all this every time. #24: TST: Fixing tests in reconst module. #27: DOC - Add reference to white matter diffusion values. #25: NF - Add prolate white matter as defaults for multi-tensor signal sim. #22: Updating my fork with the nipy master #20: RF - create OptionalImportError for traits imports #8: X error BadRequest with fvtk.show #19: DOC: add comments and example to commit codes #18: DOC: update gitwash from source #17: Optional traits #15: Octahedron in dipy.core.triangle_subdivide has wrong faces #14: DOC - fix frontpage example #12: BF(?): cart2sphere and sphere2cart are now invertible. #11: BF explicit type declaration and initialization for longest_track_len[AB] – for cython 0.15 compatibility #5: Add DSI reconstruction in Dipy #9: Bug in dipy.tracking.metrics.downsampling when we downsample a track to more than 20 pointsRelease notes for DIPY version 0.6
tools/github_stats.py):