A quick overview of features > Release notes for DIPY version 0.7

Release notes for DIPY version 0.7

GitHub stats for 2013/03/29 - 2013/12/23 (tag: 0.6.0)

The following 16 authors contributed 814 commits.

  • Ariel Rokem

  • Bago Amirbekian

  • Eleftherios Garyfallidis

  • Emmanuel Caruyer

  • Erik Ziegler

  • Gabriel Girard

  • Jean-Christophe Houde

  • Kimberly Chan

  • Matthew Brett

  • Matthias Ekman

  • Matthieu Dumont

  • Mauro Zucchelli

  • Maxime Descoteaux

  • Samuel St-Jean

  • Stefan van der Walt

  • Sylvain Merlet

We closed a total of 84 pull requests; this is the full list (generated with the script tools/github_stats.py):

Pull Requests (84):

  • PR #292: Streamline tools

  • PR #289: Examples checked for peaks_from_model

  • PR #288: Link shore examples

  • PR #279: Update release 0.7 examples’ system

  • PR #257: Continuous modelling: SHORE

  • PR #285: Bad seeds cause segfault in EuDX

  • PR #274: Peak directions update

  • PR #275: Restore example

  • PR #261: R2 term response function for Sharpening Deconvolution Transform (SDT)

  • PR #273: Fixed typos + autopep8

  • PR #268: Add gfa shmfit

  • PR #260: NF: Command line interface to QuickBundles.

  • PR #270: Removed minmax_normalize from dipy.reconst.peaks

  • PR #247: Model base

  • PR #267: Refactoring peaks_from_model_parallel

  • PR #219: Update forward sdeconv mat

  • PR #266: BF - join pool before trying to delete temp directory

  • PR #265: Peak from model issue #253

  • PR #264: peak_from_model tmp files

  • PR #263: Refactoring peaks calculations to be out of odf.py

  • PR #262: Handle cpu count exception

  • PR #255: Fix peaks_from_model_parallel

  • PR #259: Release 0.7 a few cleanups

  • PR #252: Clean cc

  • PR #243: NF Added norm input to interp_rbf and angle as an alternative norm.

  • PR #251: Another cleanup for fvtk. This time the slicer function was simplified

  • PR #249: Dsi metrics 2

  • PR #239: Segmentation based on rgb threshold + examples

  • PR #240: Dsi metrics

  • PR #245: Fix some rewording

  • PR #242: A new streamtube visualization method and different fixes and cleanups for the fvtk module

  • PR #237: WIP: cleanup docs / small refactor for median otsu

  • PR #221: peaks_from_model now return peaks directions

  • PR #234: BF: predict for cases when the ADC is multi-D and S0 is provided as a volume

  • PR #232: Fix peak extraction default value of relative_peak_threshold

  • PR #227: Fix closing upon download completion in fetcher

  • PR #230: Tensor predict

  • PR #229: BF: input.dtype is used per default

  • PR #210: Brainextraction

  • PR #226: SetInput in vtk5 is now SetInputData in vtk6

  • PR #225: fixed typo

  • PR #212: Tensor visualization

  • PR #223: Fix make examples for windows.

  • PR #222: Fix restore bug

  • PR #217: RF - update csdeconv to use SphHarmFit class to reduce code duplication.

  • PR #208: Shm coefficients in peaks_from_model

  • PR #216: BF - fixed mask_voxel_size bug and added test. Replaced promote_dtype wi…

  • PR #211: Added a md5 check to each dataset.

  • PR #54: Restore

  • PR #213: Update to a more recent version of six.py.

  • PR #204: Maxime’s [Gallery] Reconst DTI example revisited

  • PR #207: Added two new datasets online and updated fetcher.py.

  • PR #209: Fixed typos in reconst/dti.py

  • PR #206: DOC: update the docs to say that we support python 3

  • PR #205: RF: Minor corrections in index.rst and CSD example

  • PR #173: Constrained Spherical Deconvolution and the Spherical Deconvolution Transform

  • PR #203: RF: Rename tensor statistics to remove “tensor_” from them.

  • PR #202: Typos

  • PR #201: Bago’s Rename sph basis functions corrected after rebasing and other minor lateral fixes

  • PR #191: DOC - clarify docs for SphHarmModel

  • PR #199: FIX: testfail due to Non-ASCII character xe2 in markov.py

  • PR #189: Shm small fixes

  • PR #196: DOC: add reference section to ProbabilisticOdfWeightedTracker

  • PR #190: BF - fix fit-tensor handling of file extensions and mask=none

  • PR #182: RF - fix disperse_charges so that a large constant does not cause the po…

  • PR #183: OPT: Modified dipy.core.sphere_stats.random_uniform_on_sphere, cf issue #181

  • PR #185: DOC: replace soureforge.net links with nipy.org

  • PR #180: BF: fix Cython TypeError from negative indices to tuples

  • PR #179: BF: doctest output difference workarounds

  • PR #176: MRG: Py3 compat

  • PR #178: RF: This function is superseded by read_bvals_bvecs.

  • PR #170: Westin stats

  • PR #174: RF: use $PYTHON variable for python invocation

  • PR #172: DOC: Updated index.rst and refactored example segment_quickbundles.py

  • PR #169: RF: refactor pyx / c file stamping for packaging

  • PR #168: DOC: more updates to release notes

  • PR #167: Merge maint

  • PR #166: BF: pyc and created trk files were in eg archive

  • PR #160: NF: add script to build dmgs from buildbot mpkgs

  • PR #164: Calculation for mode of a tensor

  • PR #163: Remove dti tensor

  • PR #161: DOC: typo in the probabilistic tracking example.

  • PR #162: DOC: update release notes

  • PR #159: Rename install test scripts